On Track to Read Your Mind?

An Interview with Jelmer Borst

Recently, Jelmer Borst received a prestigious NWO VENI grant to investigate how people process complex issues, like an algebra problem, in their brains. To gain more insight into this phenomenon, he aims to develop a detailed computational model of problem solving in the fronto-parietal network to uncover more about general problem-solving mechanisms. Michiel Hooiveld, Research Coordinator at BCN-Brain, interviewed him for the latest issue of the BCN Newsletter.


Michiel Hooiveld: What approach will you choose within your research project to uncover more about problem solving in the fronto-parietal network?

Jelmer Borst: I will use two innovative analysis techniques that I helped develop: model-based fMRI analysis and Hidden semi-Markov Model (HSMM) analysis. I will use both techniques to analyse data of the same experiment measured with three different neuroimaging methods (fMRI, EEG, and MEG).

MH: What is so unique about these two techniques in combination with these three different neuroimaging methods?

JB: Model-based fMRI analysis and HSMM analysis are more powerful than traditional neuroimaging analysis methods. In model-based analysis, we use a computer simulation of the task as the basis of our data analysis, which results in superior localization compared to standard methods, as well as providing a direct link between theory and data. However, this analysis is dependent on the quality of the models that we use. I will therefore also use a new method that combines multi-variate pattern analysis with hidden semi-Markov models to automatically discover cognitive processing stages – and thereby the basis for a computer model – in fMRI or MEG/EEG data. So, I will approach the problem from two sides: on the one hand I use model-based analysis to do theory-guided research, while applying the MVPA-HSMM method to also approach the problem in a bottom-up manner.

In addition, using three different neuroimaging methods for a single experiment provides a unique opportunity to combine the strengths of these methods: fMRI has high spatial resolution, while EEG and MEG have excellent temporal resolution, and MEG reasonable spatial resolution. The data of these three methods, in combination with the new analysis techniques, will hopefully allow me to build a detailed computational model that explains how problem solving works in the brain.


Results of the HSMM analysis. A) shows the brain signatures of six different processing states that were identified in EEG data of an associative recognition task. B) shows the duration of these six states in the different conditions. This indicates, for instance, that the ‘Associative retrieval’ state determines for a large part the variability of the response times, while occurring early in the trial. Adapted from Borst & Anderson, 2015, NeuroImage.


MH: What would you ultimately like to achieve within the framework of your project?

JB: On a theory level, I hope to construct a detailed computational model that explains how problem solving functions at an algorithmic level within the fronto-parietal loop. At the same time, model-based fMRI analysis and HSMM analysis are still very recent developments. I hope that my research contributes in developing these methods into mature analysis techniques. These days, it’s relatively easy to collect neuroimaging data, but I think we need better analysis techniques to get at all the information that is present in these data.

MH: What are the main applications of your results if your project succeeds?

JB: Besides providing insight into problem solving, I think the main applications will be the analysis methods. We already publish all the code and data together with our papers to enable other researchers to use our methods, and one thing I would like to do is move the code from Matlab to open source languages (e.g., Python, R) to make it more accessible.

MH: Are we really on track to read people’s minds in the near future?

JB: My research is aimed at improving model-based fMRI and HSMM analysis and developing them into mature analysis techniques. I am convinced that this will bring us one step closer to true mind reading.


Neuroimaging Methods

fMRI estimates neural activity by measuring blood oxygenation. The measured signal follows neural activity by 4-6 seconds. fMRI’s spatial resolution is in the order of millimeters.
EEG measures the electrical signal of the brain on the scalp. As the skull distorts the electrical signal, its spatial resolution is low. However, its temporal resolution is excellent.
MEG measures the magnetic signal of the brain on the scalp. Because the magnetic signal is hardly distorted by the skull and brain tissue it is possible – albeit complex – to reconstruct the origin of neural activitywith a precision of ~1cm. MEG’s temporal resolution is excellent.
Screen Shot 2016-05-04 at 15.36.38


JelmerBorstCurriculum Vitae
Jelmer Borst (1983) completed a bachelor in Artificial Intelligence at the University of Groningen, and the BCN research master. He received his PhD in Artificial Intelligence in 2012 from the University of Groningen, by developing computational models of behavioral and fMRI data of multitasking. From 2012 to 2014 he worked as a postdoctoral researcher at Carnegie Mellon University investigating new analysis techniques for fMRI and EEG data. In 2014 he moved back to the Artificial Intelligence department, where he started his VENI research project in January of this year.
Further reading

• Borst, J.P., Taatgen, N.A., & Van Rijn, H. (2011). Using a Symbolic Process Model as input for Model-Based fMRI Analysis: Locating the Neural Correlates of Problem State Replacements. NeuroImage 58(1), 137-147.
In this paper we developed a model-based fMRI analysis technique for cognitive process models.
• Borst, J.P. & Anderson, J.R. (2013). Using Model-Based functional MRI to locate Working Memory Updates and Declarative Memory Retrievals in the Fronto-Parietal Network. Proceedings of the National Academy of Sciences USA 110(5), 1628-1633.
We applied model-based fMRI analysis to five published fMRI-modeling studies, and with this meta-analysis, located neural correlates of working memory updates and declarative memory retrievals.
• Borst, J.P. & Anderson, J.R. (2015). The Discovery of Processing Stages: Analyzing EEG data with Hidden Semi-Markov Models. NeuroImage 108, 60-73.
We developed the HSMM-EEG analysis technique that can discover cognitive processing stages in EEG data and gives an indication of their function.
• Anderson, J.R., Zhang, Q., Borst, J.P., & Walsh, M.M. (accepted). The Discovery of Processing Stages: Extension of Sternberg’s Method. Psychological Review.
In this paper we improved the HSMM-EEG technique by giving it a stronger theoretical basis, and showed that it robustly generalizes over two tasks.
Tassos Sarampalis on Twitter

Dr. Sarampalis is a lecturer at the Psychology department of the University of Groningen. He began his career in psychoacoustics in the UK where he worked with Deb Fantini and Chris Plack, before moving to California to work on hearing devices, first with Monita Chatterjee and then with Erv Hafter. His current research interests involve understanding the contributions of cognition in complex hearing situations and the interactions of cognition and hearing impairment. For more information, you can visit his website.

Select Publications

  • Everhardt, M. K., Sarampalis, A., Coler, M., Başkent, D., & Lowie, W. (2020). Meta-Analysis on the Identification of Linguistic and Emotional Prosody in Cochlear Implant Users and Vocoder Simulations. Ear Hear, 1. https://doi.org/10.1097/aud.0000000000000863 pdf

  • Pals, C., Sarampalis, A., Beynon, A., Stainsby, T., & Başkent, D. (2020). Effect of Spectral Channels on Speech Recognition, Comprehension, and Listening Effort in Cochlear-Implant Users. Trends in Hearing. https://doi.org/10.1177/2331216520904617 pdf

  • Everhardt, M. K., Sarampalis, A., Coler, M., Başkent, D., & Lowie, W. (2019). “Perception of L2 lexical stress in words degraded by a cochlear implant simulation.” Proceedings of the 19th International Congress of Phonetic Sciences (ICPhS). Melbourne, Australia. pdf

  • Pals, C., Sarampalis, A., van Dijk, M, Baskent, D. (2018). “Effects of Additional Low-Pass–Filtered Speech on Listening Effort for Noise-Band–Vocoded Speech in Quiet and in Noise.” Ear and Hearing, pdf

  • Baskent, D., Clarke, J., Pals, C., Benard, M.R., Bhargava, P., Saija, J., Sarampalis, A., Wagner, A., & Gaudrain, E. (2016). “Cognitive Compensation of Speech Perception With Hearing Impairment, Cochlear Implants, and Aging: How and to What Degree Can It Be Achieved?” Trends in Hearing, 20, 1-16. http://doi.org/10.1177/2331216516670279 pdf

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